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Recent Publications
Article
1 - 2012 ; April ; M. Prevost, L. Sauguet, H. Nury, C. Van Renterghem, C. Huon, F. Poitevin, M. Baaden, M. Delarue, P.-J. Corringer ; A novel Locally Closed Conformation of a Bacterial Pentameric Proton-gated Ion Channel ; NATURE STRUCTURAL & MOLECULAR BIOLOGY (Google)(Scholar)(Pubmed)
2 - 2012 ; May ; M. Chavent, M. Baaden*, E. Hénon, S. Antonczak ; Bientôt dans votre amphithéâtre, la chimie fera son cinéma. De la bonne utilisation des ressources informatiques pour l’enseignement : visualisation moléculaire, illustration de processus chimiques et de modèles physiques ; ACTUALITé CHIMIQUE ; 363 (Google)(Scholar)(Pubmed)
3 - 2012 ; June ; L. Darre, A. Tek, M. Baaden*, S. Pantano* ; Mixing atomistic and coarse grain solvation models for MD simulations: let WT4 handle the bulk ; JCTC (Google)(Scholar)(Pubmed)
4 - 2012 ; Nov ; B. Laurent, S. Murail, F. Da Silva, P.-J. Corringer, M. Baaden ; Modeling complex biological systems: From solution chemistry to membranes and channels ; PURE APPL. CHEM. ; ASAP (Google)(Scholar)(Pubmed)
Inbook
1 - 2012 ; A. Tek, B. Laurent, M. Piuzzi, Z. Lu, M. Baaden, O. Delalande, M. Chavent, N. Férey, C. Martin, L. Piccinali, B. Katz, P. Bourdot, Ludovic Autin ; Advances in Human-Protein Interaction - Interactive And Immersive Molecular Simulations ; W. Cai and H. Hong ; Intech, Croatia (Google)(Scholar)(Pubmed)
Article
1 - 2011 ; January ; H. Nury, C. Van Renterghem, Y. Weng, A. Tran, M. Baaden, V. Dufresne, J.-P. Changeux, J. M. Sonner, M. Delarue and P.-J. Corringer ; X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel ; NATURE ; 469 ; 428–431 (Google)(Scholar)(Pubmed)
2 - 2011 ; February ; M. Chavent, B. Lévy, M. Krone, K. Bidmon, J. P. Nominé, T. Ertl and M. Baaden ; GPU-powered tools boost molecular visualization ; BRIEFINGS IN BIOINFORMATICS ; 12 ; 689-701 (Google)(Scholar)(Pubmed)
3 - 2011 ; Jul ; L. J. Catoire, M. Damian, M. Baaden, E. Guittet and J.-L. Banères ; Electrostatically–driven fast association and perdeuteration allow transferred cross–relaxation detection for G protein–coupled receptor ligands with equilibrium dissociation constants in the high–to–low nanomolar range ; J BIOMOLECULAR NMR ; 50 ; 3 ; 191-5 (Google)(Scholar)(Pubmed)
4 - 2011 ; Oct ; M. Chavent, A. Vanel, A. Tek, B. Levy, S. Robert, B. Raffin and M. Baaden ; GPU-accelerated atom and dynamic bond visualization using HyperBalls: a unified algorithm for balls, sticks and hyperboloids ; J COMPUT CHEM ; 32 ; 13 ; 2924-2935 (Google)(Scholar)(Pubmed)
5 - 2011 ; Sep ; O. Delalande, S. Sacquin-Mora, M. Baaden ; Enzyme closure and nucleotide binding structurally lock guanylate kinase ; BIOPHYSICAL JOURNAL ; 101 ; 6 ; 1440-1449 (Google)(Scholar)(Pubmed)
Inproceedings
1 - 2011 ; Matthieu Chavent, Marc Piuzzi, Alex Tek, Marc Baaden ; FvNano: A Virtual Laboratory to Manipulate Molecular Systems ; 1st IEEE symposium on biological data visualization, Providence, RI @ ieee visweek, 2011, N# 136 (Google)(Scholar)(Pubmed)
Poster
 | Electrostatically-driven fast association and perdeuteration allow detection of transferred cross-relaxation for G protein-coupled receptor ligands with equilibrium dissociation constants in the high-to-low nanomolar range | L. J. Catoire, M. Damian, M. Baaden, E. Guittet, J.-L. Banères | 2011
|  | Conformational dynamics in a nicotinic receptor homologue probed by simulations | H. Nury, F. Poitevin, C. Van Renterghem, B. Laurent, T. Allen, J.-P. Changeux, P.-J. Corringer, M. Delarue, M. Baaden | 2011
|  | FvNano - une plateforme de dynamique moléculaire interactive | M. Piuzzi, A. Tek, M. Chavent, A. Vanel, B. Raffin, A. Turki, S. Limet, S. Robert, N. Férey, M. Baaden | 2011
|  | UnityMol: game engine-powered GPU-boosted molecular visualization | M. Chavent, A. Tek, Z. Lv, M. Baaden | 2011
|  | GPU-accelerated molecular visualization using the Unity3D game engine | Z. Lv, M. Chavent, A. Tek, M. Baaden | 2011
|  | Insights into Membrane Fusion from Molecular Dynamics Simulations of SNARE Proteins | A. Tek, B. Laurent, M. Baaden | 2011
|  | bioSpring, an interactive and multi-resolution software for flexible docking and for mechanical exploration of large biomolecular assemblies - methods | N. Férey, O. Delalande, M. Baaden | 2011
|  | FvNano - an interactive molecular dynamics platform | M. Piuzzi, A. Tek, M. Baaden, M. Chavent, M. Dreher, B. Raffin, A. Turki, S. Limet, S. Robert, N. Férey | 2012
|  | Flowvr-Nano - visualiser, toucher, déformer et assembler des molécules du bout des doigts | M. Baaden & FvNano team | 2012
|  | Pushing the boundaries of computational biology with interdisciplinary approaches | M. Baaden | 2012
|  | HyperBalls on GPU: dynamic visualization of molecular structures - Scientific Visualization Accelerated by Graphics Processors | M. Chavent, A. Tek, Z. Lu, M. Piuzzi, B. Laurent, M. Baaden | 2012
|  | Insights into Membrane Fusion from Molecular Dynamics Simulations of SNARE Proteins | A. Tek, P.J. Bond, M.S.P. Sansom, M. Baaden | 2012
|  | Study of the interaction between general anesthetics and a bacterial homologue to the human nicotinic receptor | B. Laurent, S. Murail, P.-J. Corringer, M. Delarue, M. Baaden | 2012
|  | UnityMol: Visualization with a game engine | Z. Lv, A. Tek, M. Chavent, M. Baaden | 2012
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