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Scientific Publications Summary

You can find some of the documents listed below in my open access archive on HAL
Article
1 - 2012 ; April ; M. Prevost, L. Sauguet, H. Nury, C. Van Renterghem, C. Huon, F. Poitevin, M. Baaden, M. Delarue, P.-J. Corringer ; A novel Locally Closed Conformation of a Bacterial Pentameric Proton-gated Ion Channel ; NATURE STRUCTURAL & MOLECULAR BIOLOGY (Google)(Scholar)(Pubmed)
2 - 2012 ; May ; M. Chavent, M. Baaden*, E. Hénon, S. Antonczak ; Bientôt dans votre amphithéâtre, la chimie fera son cinéma. De la bonne utilisation des ressources informatiques pour l’enseignement : visualisation moléculaire, illustration de processus chimiques et de modèles physiques ; ACTUALITé CHIMIQUE ; 363 (Google)(Scholar)(Pubmed)
3 - 2012 ; June ; L. Darre, A. Tek, M. Baaden*, S. Pantano* ; Mixing atomistic and coarse grain solvation models for MD simulations: let WT4 handle the bulk ; JCTC (Google)(Scholar)(Pubmed)
4 - 2012 ; Sep ; D. Costa, P.-A. Garrain, M. Baaden ; Understanding small biomolecule-biomaterial interactions: A review of fundamental theoretical and experimental approaches for biomolecule interactions with inorganic surfaces ; J BIOMED MATER RES PART A ; 00A ; 000–000 (Google)(Scholar)(Pubmed)
5 - 2012 ; Nov ; B. Laurent, S. Murail, F. Da Silva, P.-J. Corringer, M. Baaden ; Modeling complex biological systems: From solution chemistry to membranes and channels ; PURE APPL. CHEM. ; ASAP (Google)(Scholar)(Pubmed)
6 - 2011 ; January ; H. Nury, C. Van Renterghem, Y. Weng, A. Tran, M. Baaden, V. Dufresne, J.-P. Changeux, J. M. Sonner, M. Delarue and P.-J. Corringer ; X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel ; NATURE ; 469 ; 428–431 (Google)(Scholar)(Pubmed)
7 - 2011 ; February ; M. Chavent, B. Lévy, M. Krone, K. Bidmon, J. P. Nominé, T. Ertl and M. Baaden ; GPU-powered tools boost molecular visualization ; BRIEFINGS IN BIOINFORMATICS ; 12 ; 689-701 (Google)(Scholar)(Pubmed)
8 - 2011 ; Jul ; L. J. Catoire, M. Damian, M. Baaden, E. Guittet and J.-L. Banères ; Electrostatically–driven fast association and perdeuteration allow transferred cross–relaxation detection for G protein–coupled receptor ligands with equilibrium dissociation constants in the high–to–low nanomolar range ; J BIOMOLECULAR NMR ; 50 ; 3 ; 191-5 (Google)(Scholar)(Pubmed)
9 - 2011 ; Oct ; M. Chavent, A. Vanel, A. Tek, B. Levy, S. Robert, B. Raffin and M. Baaden ; GPU-accelerated atom and dynamic bond visualization using HyperBalls: a unified algorithm for balls, sticks and hyperboloids ; J COMPUT CHEM ; 32 ; 13 ; 2924-2935 (Google)(Scholar)(Pubmed)
10 - 2011 ; Sep ; O. Delalande, S. Sacquin-Mora, M. Baaden ; Enzyme closure and nucleotide binding structurally lock guanylate kinase ; BIOPHYSICAL JOURNAL ; 101 ; 6 ; 1440-1449 (Google)(Scholar)(Pubmed)
11 - 2010 ; Nov ; Sacquin-Mora, S. and Delalande, O. and Baaden, M. ; Functional Modes and Residue Flexibility Control the Anisotropic Response of Guanylate Kinase to Mechanical Stress ; BIOPHYS J ; 99 ; 3412--3419 (Google)(Scholar)(Pubmed)
12 - 2010 ; Delalande, O. and Ferey, N. and Laurent, B. and Gueroult, M. and Hartmann, B. and Baaden, M. ; Multi-resolution approach for interactively locating functionally linked ion binding sites by steering small molecules into electrostatic potential maps using a haptic device ; PAC SYMP BIOCOMPUT ; 205--215 (Google)(Scholar)(Pubmed)
13 - 2010 ; Feb ; Corringer, P. J. and Baaden, M. and Bocquet, N. and Delarue, M. and Dufresne, V. and Nury, H. and Prevost, M. and Van Renterghem, C. ; Atomic structure and dynamics of pentameric ligand-gated ion channels: new insight from bacterial homologues ; J. PHYSIOL. (LOND.) ; 588 ; 565--572 (Google)(Scholar)(Pubmed)
14 - 2010 ; Apr ; Nury, H. and Poitevin, F. and Van Renterghem, C. and Changeux, J. P. and Corringer, P. J. and Delarue, M. and Baaden, M. ; One-microsecond molecular dynamics simulation of channel gating in a nicotinic receptor homologue ; PROC. NATL. ACAD. SCI. U.S.A. ; 107 ; 6275--6280 (Google)(Scholar)(Pubmed)
15 - 2010 ; Mar ; Sinha, D. K. and Neveu, P. and Gagey, N. and Aujard, I. and Benbrahim-Bouzidi, C. and Le Saux, T. and Rampon, C. and Gauron, C. and Goetz, B. and Dubruille, S. and Baaden, M. and Volovitch, M. and Bensimon, D. and Vriz, S. and Jullien, L. ; Photocontrol of protein activity in cultured cells and zebrafish with one- and two-photon illumination ; CHEMBIOCHEM ; 11 ; 653--663 (Google)(Scholar)(Pubmed)
16 - 2010 ; Oct ; Saladin, A. and Amourda, C. and Poulain, P. and Ferey, N. and Baaden, M. and Zacharias, M. and Delalande, O. and Prevost, C. ; Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments ; NUCLEIC ACIDS RES. ; 38 ; 6313--6323 (Google)(Scholar)(Pubmed)
17 - 2010 ; Nov ; Y. Zhang, M. Baaden, J. Yan, J. Shao, S. Qiu, Y. Wu and Y. Ding ; The molecular recognition mechanism for superoxide dismutase presequence binding to the mitochondrial protein import receptor Tom20 from Oryza sativa involves an LRTLA motif ; J PHYS CHEM B ; 114 ; 13839--13846 (Google)(Scholar)(Pubmed)
18 - 2010 ; Nov ; M. Gueroult, D. Picot, J. Abi-Ghanem, B. Hartmann and M. Baaden ; How cations can assist DNase I in DNA binding and hydrolysis ; PLOS COMPUT. BIOL. ; 6 ; e1001000 (Google)(Scholar)(Pubmed)
19 - 2009 ; Nov ; Delalande, O. and Ferey, N. and Grasseau, G. and Baaden, M. ; Complex molecular assemblies at hand via interactive simulations ; J COMPUT CHEM ; 30 ; 2375--2387 (Google)(Scholar)(Pubmed)
20 - 2009 ; Jan ; Bocquet, N. and Nury, H. and Baaden, M. and Le Poupon, C. and Changeux, J. P. and Delarue, M. and Corringer, P. J. ; X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation ; NATURE ; 457 ; 111--114 (Google)(Scholar)(Pubmed)
21 - 2009 ; Jul ; Durrieu, M. P. and Bond, P. J. and Sansom, M. S. and Lavery, R. and Baaden, M. ; Coarse-grain simulations of the R-SNARE fusion protein in its membrane environment detect long-lived conformational sub-states ; CHEMPHYSCHEM ; 10 ; 1548--1552 (Google)(Scholar)(Pubmed)
22 - 2008 ; MAY 1 ; Durrieu, Marie-Pierre and Lavery, Richard and Baaden, Marc ; Interactions between neuronal fusion proteins explored by molecular dynamics ; BIOPHYSICAL JOURNAL ; 94 ; 9 ; 3436-3446 (Google)(Scholar)(Pubmed)
23 - 2008 ; FEB ; Cox, Katherine and Bond, Peter J. and Grottesi, Alessandro and Baaden, Marc and Sansom, Mark S. P. ; Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers ; EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS ; 37 ; 2 ; 131-141 (Google)(Scholar)(Pubmed)
24 - 2008 ; JAN 1 ; Neri, Marilisa and Baaden, Marc and Carnevale, Vincenzo and Anselmi, Claudio and Maritan, Amos and Carloni, Paolo ; Microseconds dynamics simulations of the outer-membrane protease T ; BIOPHYSICAL JOURNAL ; 94 ; 1 ; 71-78 (Google)(Scholar)(Pubmed)
25 - 2007 ; MAR ; Tai, Kaihsu and Baaden, Marc and Murdock, Stuart and Wu, Bing and Ng, Muan Hong and Johnston, Steven and Boardman, Richard and Fangohr, Hans and Cox, Katherine and Essex, Jonathan W. and Sansom, Mark S. P. ; Three hydrolases and a transferase: Comparative analysis of active-site dynamics via the BioSimGrid database ; JOURNAL OF MOLECULAR GRAPHICS \& MODELLING ; 25 ; 6 ; 896-902 (Google)(Scholar)(Pubmed)
26 - 2005 ; OCT ; Law, RJ and Capener, C and Baaden, M and Bond, PJ and Campbell, J and Patargias, G and Arinaminpathy, Y and Sansom, MSP ; Membrane protein structure quality in molecular dynamics simulation ; JOURNAL OF MOLECULAR GRAPHICS \& MODELLING ; 24 ; 2 ; 157-165 (Google)(Scholar)(Pubmed)
27 - 2004 ; DEC 1 ; Faraldo-Gomez, JD and Forrest, LR and Baaden, M and Bond, PJ and Domene, C and Patargias, G and Cuthbertson, J and Sansom, MSP ; Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations ; PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS ; 57 ; 4 ; 783-791 (Google)(Scholar)(Pubmed)
28 - 2004 ; NOV ; Baaden, M and Sansom, MSP ; OmpT: Molecular dynamics simulations of an outer membrane enzyme ; BIOPHYSICAL JOURNAL ; 87 ; 5 ; 2942-2953 (Google)(Scholar)(Pubmed)
29 - 2003 ; AUG 1 ; Baaden, M and Meier, C and Sansom, MSP ; A molecular dynamics investigation of mono and dimeric states of the outer membrane enzyme OMPLA ; JOURNAL OF MOLECULAR BIOLOGY ; 331 ; 1 ; 177-189 (Google)(Scholar)(Pubmed)
30 - 2003 ; Baaden, M and Berny, F and Madic, C and Schurhammer, R and Wipff, G ; Theoretical studies on lanthanide cation extraction by picolinamides: Ligand-cation interactions and interfacial behavior ; SOLVENT EXTRACTION AND ION EXCHANGE ; 21 ; 2 ; 199-220 (Google)(Scholar)(Pubmed)
31 - 2003 ; APR 8 ; Campbell, JD and Biggin, PC and Baaden, M and Sansom, MSP ; Extending the structure of an ABC transporter to atomic resolution: Modeling and simulation studies of MsbA ; BIOCHEMISTRY ; 42 ; 13 ; 3666-3673 (Google)(Scholar)(Pubmed)
32 - 2002 ; JAN 17 ; Baaden, M and Schurhammer, R and Wipff, G ; Molecular dynamics study of the uranyl extraction by tri-n-butylphosphate (TBP): Demixing of water/''oil''/TBP solutions with a comparison of supercritical CO2 and chloroform ; JOURNAL OF PHYSICAL CHEMISTRY B ; 106 ; 2 ; 434-441 (Google)(Scholar)(Pubmed)
33 - 2001 ; NOV 15 ; Baaden, M and Burgard, M and Wipff, G ; TBP at the water-oil interface: The effect of TBP concentration and water acidity investigated by molecular dynamics simulations ; JOURNAL OF PHYSICAL CHEMISTRY B ; 105 ; 45 ; 11131-11141 (Google)(Scholar)(Pubmed)
34 - 2001 ; FEB ; Baaden, M and Berny, F and Wipff, G ; The chloroform TBP aqueous nitric acid interfacial system: a molecular dynamics investigation ; JOURNAL OF MOLECULAR LIQUIDS ; 90 ; 1-3, Sp. Iss. SI ; 1-9 (Google)(Scholar)(Pubmed)
35 - 2001 ; Baaden, M and Burgard, M and Boehme, C and Wipff, G ; Lanthanide cation binding to a phosphoryl-calix[4]arene: the importance of solvent and counterions investigated by molecular dynamics and quantum mechanical simulations ; PHYSICAL CHEMISTRY CHEMICAL PHYSICS ; 3 ; 7 ; 1317-1325 (Google)(Scholar)(Pubmed)
36 - 2000 ; Troxler, L and Baaden, M and Bohmer, V and Wipff, G ; Complexation of M3+ lanthanide cations by calix[4]arene-CMPO ligands: A molecular dynamics study in methanol solution and at a water/chloroform interface ; SUPRAMOLECULAR CHEMISTRY ; 12 ; 1, Sp. Iss. SI ; 27+ (Google)(Scholar)(Pubmed)
37 - 2000 ; AUG 17 ; Baaden, M and Berny, F and Madic, C and Wipff, G ; M3+ lanthanide cation solvation by acetonitrile: The role of cation size, counterions, and polarization effects investigated by molecular dynamics and quantum mechanical simulations ; JOURNAL OF PHYSICAL CHEMISTRY A ; 104 ; 32 ; 7659-7671 (Google)(Scholar)(Pubmed)
38 - 2000 ; Baaden, M and Wipff, G and Yaftian, MR and Burgard, M and Matt, D ; Cation coordination by calix[4]arenes bearing amide and/or phosphine oxide pendant groups: how many arms are needed to bind Li+ vs. Na+? A combined NMR and molecular dynamics study ; JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2 ; 7 ; 1315-1321 (Google)(Scholar)(Pubmed)
39 - 2000 ; MAY 24 ; Baaden, M and Berny, F and Boehme, C and Muzet, N and Schurhammer, R and Wipff, G ; Interaction of trivalent lanthanide cations with phosphoryl derivatives, amide, anisole, pyridine and triazine ligands: a quantum mechanics study ; JOURNAL OF ALLOYS AND COMPOUNDS ; 303 ; 104-111 (Google)(Scholar)(Pubmed)
40 - 2000 ; MAY 15 ; Lambert, B and Jacques, V and Shivanyuk, A and Matthews, SE and Tunayar, A and Baaden, M and Wipff, G and Bohmer, V and Desreux, JF ; Calix[4]arenes as selective extracting agents. An NMR dynamic and conformational investigation of the lanthanide(III) and thorium(IV) complexes ; INORGANIC CHEMISTRY ; 39 ; 10 ; 2033-2041 (Google)(Scholar)(Pubmed)
41 - 2000 ; MAR 20 ; Baaden, M and Granger, P and Strich, A ; Dependence of NMR isotropic shift averages and nuclear shielding tensors on the internal rotation of the functional group X about the C-X bond in seven simple vinylic derivatives H2C=CH-X ; MOLECULAR PHYSICS ; 98 ; 6 ; 329-342 (Google)(Scholar)(Pubmed)
Inproceedings
1 - 2011 ; Matthieu Chavent, Marc Piuzzi, Alex Tek, Marc Baaden ; FvNano: A Virtual Laboratory to Manipulate Molecular Systems ; 1st IEEE symposium on biological data visualization, Providence, RI @ ieee visweek, 2011, N# 136 (Google)(Scholar)(Pubmed)
2 - 2010 ; M. Chavent, A. Vanel, B. Lévy, B. Raffin, A. Tek and M. Baaden ; A Rendering Method for Small Molecules up to Macromolecular Systems: HyperBalls Accelerated by Graphics Processors ; JOBIM (Google)(Scholar)(Pubmed)
3 - 2010 ; A. Tek, B. Laurent, N. Férey and M. Baaden ; Interacting with Molecular Simulations using a Multimodal VR Framework ; EuroVR-EVE ; 1-4 (Google)(Scholar)(Pubmed)
4 - 2008 ; October ; N. Férey, O. Delalande, G. Grasseau and M. Baaden ; A VR Framework for Interacting with Molecular Simulations ; Symposium on Virtual Reality Software and Technology (ACM-VRST 2008) ; 91-94 (Google)(Scholar)(Pubmed)
5 - 2008 ; November ; N. Férey, O. Delalande, G. Grasseau, and M. Baaden ; From Interactive to Immersive Molecular Dynamics ; Workshop on Virtual Reality Interaction and Physical Simulation (VRIPHYS 08 - Eurographics) ; F. Faure and M. Teschner ; 89-96 (Google)(Scholar)(Pubmed)
6 - 2007 ; E. Krieger, L. Leger, M.P. Durrieu, N. Taib, P. Bond, M. Laguerre, R. Lavery, M.S.P. Sansom and M. Baaden ; Atomistic modeling of the membrane-embedded synaptic fusion complex: a grand challenge project on the DEISA HPC infrastructure ; ParCo 2007, Parallel Computing: Architectures, Algorithms and Applications ; C.B.G.R. Joubert, F. Peters, T. Lippert, M. Buecker, B. Gibbon, and B. Mohr ; John von Neumann Institute for Computing, Juelich, Germany. ; 38 ; 729-736 (Google)(Scholar)(Pubmed)
7 - 2000 ; M. Baaden, F. Berny, N. Muzet, R. Schurhammer and G. Wipff ; Separation of radioactive cations by liquid-liquid extraction: computer simulations of water / oil solutions of salts and ionophores ; Proceedings of the Euradwaste 1999 conference ; C. Davies ; 390-393 (Google)(Scholar)(Pubmed)
Book
1 - 2010 ; Collectif (M. Baaden et al.) ; Itinéraires Bis. Mon parcours de jeune chercheur : 13 chercheurs du CNRS témoignent. ; Connaissance et Savoirs (Google)(Scholar)(Pubmed)
Inbook
1 - 2012 ; A. Tek, B. Laurent, M. Piuzzi, Z. Lu, M. Baaden, O. Delalande, M. Chavent, N. Férey, C. Martin, L. Piccinali, B. Katz, P. Bourdot, Ludovic Autin ; Advances in Human-Protein Interaction - Interactive And Immersive Molecular Simulations ; W. Cai and H. Hong ; Intech, Croatia (Google)(Scholar)(Pubmed)
2 - 2010 ; S. Khalid and M. Baaden ; Molecular dynamics studies of outer membrane proteins : a story of barrels ; P.C. Biggin and M.S.P. Sansom ; Royal Society of Chemistry ; 225-247 (Google)(Scholar)(Pubmed)
3 - 2007 ; M. Baaden and R. Lavery ; There's plenty of room in the middle: multi-scale modelling of biological systems ; A.G. de Brevern ; Research signpost, India ; 173-195 (Google)(Scholar)(Pubmed)
4 - 2000 ; M. Baaden, F. Berny, N. Muzet, L. Troxler and G. Wipff ; Interfacial features of assisted liquid-liquid extraction of uranyl and cesium salts: a molecular dynamics investigation ; G. Lumetta, R.D. Rogers, and A.S. Gopalan ; Oxford University Press, New York ; 71-85 (Google)(Scholar)(Pubmed)
Phdthesis
1 - 2010 ; M. Baaden ; Simulations numériques de systèmes biologiques complexes : dynamique, structure et fonction de transporteurs, canaux et enzymes (Google)(Scholar)(Pubmed)
2 - 2000 ; M. Baaden ; Etudes de molécules extractantes en solution et aux interfaces liquide-liquide: aspects structuraux et mécanistiques des effets de synergie (Google)(Scholar)(Pubmed)
Misc
1 - 1999 ; M. Baaden ; Molecular Modeling with the ChemOffice Ultra 4.5 program suite. (Google)(Scholar)(Pubmed)
Poster
 | Selective extraction of lanthanide cations by tetra-phosphineoxide substituted calix{4}arenes: a molecular dynamics study at a water/chloroform interface | M. Baaden, M. Burgard, D. Matt et G. Wipff | 1999
|  | Dependence of isotropic shift averages and nuclear shielding tensors on the internal rotation of the functional group X about the C-X bond in seven simple vinylic derivatives H2C=CH-X | A. Strich, M. Baaden et P. Granger | 1999
|  | Computer modeling of liquid - liquid ion extraction | M. Baaden, F. Berny, N. Muzet, R. Schurhammer et G. Wipff | 2000
|  | Etudes de molécules extractantes en solution: aspects structuraux et mécanistiques des effets de synergie | M. Baaden | 1999
|  | Barrels & corks in a computer, modelling bacterial iron transport systems | M. Baaden et M.S.P. Sansom | 2001
|  | Simulation of outer membrane proteins | M.S.P. Sansom, P. Bond, M. Baaden, J.D. Faraldo-Gómez, S. Deol, C. Meier et K. Cox | 2005
|  | Molecular dynamics simulations of outer membrane phospholipase A | M. Baaden, C. Meier et M.S.P. Sansom | 2003
|  | On the convergence of the conformational sampling in molecular dynamics simulations of membrane proteins | J.D. Faraldo-Gómez, L.R. Forrest, M. Baaden, P.J. Bond, C. Domene, G. Patargias, J. Cuthbertson et M.S.P. Sansom | 2005
|  | Modélisation moléculaire des mutations du récepteur des lipoprotéines de faible densité impliquées dans l'hypercholesterolémie familiale au Maroc | R. Chater, D. Perahia, K.A. Chihab, S. Moussamih, A. Adlouni, M. Baaden, K. Zakrzewska, R. Lavery, M. El Messal et A. Kettani | 2005
|  | Simulation par dynamique moléculaire du complexe SNARE synaptique | M.P. Durrieu, M. Baaden et R. Lavery | 2005
|  | Computational study of the low density lipoprotein receptor | M. Baaden et R. Lavery | 2006
|  | Probing mechanical properties of molecular motors and fusion proteins | M. Baaden, M.P. Durrieu, E. Levy et R. Lavery | 2006
|  | Fusion membranaire in silico | M.P. Durrieu, R. Lavery et M. Baaden | 2007
|  | FlowVRNano: vers un laboratoire virtuel | M. Baaden | 2007
|  | SHAMAN devient FlowVRNano | LBT team | 2008
|  | MDDriver: an efficient tool for driving Molecular Dynamics simulations | O. Delalande, N. Férey, G. Grasseau, M. Baaden | 2008
|  | A VR framework for interacting with molecular simulations | N. Férey, O. Delalande, G. Grasseau, M. Baaden | 2008
|  | SNAREs drum up in silico: molecular dynamics simulations of the synaptic fusion complex | M.P. Durrieu, R. Lavery, M. Baaden | 2008
|  | FlowVRNano - a virtual laboratory for analysing and controlling the dynamics of molecular structures | N. Férey, O. Delalande, G. Grasseau, M. Baaden | 2008
|  | Relations entre fluctuations structurales et fonction enzymatique de la guanylate kinase de Mycobacterium Tuberculosis- impact de grands changements conformationnels | O. Delalande, S. Sacquin-Mora, M. Baaden | 2009
|  | New insights on protein/DNA non specific interaction: the DNase I/DNA model | M. Guéroult, J, Abi Ghanem, B, Heddi, M. Lavigne, M. Baaden, B. Hartmann | 2009
|  | FlowVRNano - a virtual laboratory dedicated to interactive simulations of large molecular systems | N. Férey, O.Delalande, M. Baaden | 2009
|  | Analyse de protéines transmembranaires par polyèdres de Voronoi/Laguerre - les canaux d´eau à travers FepA | J.Esque, M. Baaden, C. Oguey | 2009
|  | Using Human Expertise in Protein-Protein Docking: From Biological Knowledge to Interactive Molecular Simulations | M. Chavent, A. Ghoorah, M.-D. Devignes, M. Smail-Tabbone, V. Venkatraman, F. Leclerc, M. Baaden, B. Maigret,D. Ritchie | 2009
|  | Interactive simulations, a great promise for predicting interactions | M. Chavent, O. Delalande, N. Ferey, B. Laurent,A. Tek, M. Baaden | 2009
|  | FlowVRNano - un laboratoire virtuel pour modéliser les systèmes moléculaires nanoscopiques en biologie et dans les matériaux | N. Férey, O. Delalande, M. Baaden | 2009
|  | Towards efficient tools for multiscale modelling of soft matter | N. Férey, O. Delalande, G. Grasseau, M. Baaden | 2009
|  | The Closure Mechanism Of M. Tuberculosis Guanylate Kinase Relates Structural Fluctuations To Enzymatic Function | O. Delalande, S. Sacquin-Mora, M. Baaden | 2009
|  | Multi-resolution and multi-physics approach for interactively locating funtionally linked ion binding sites by steering small molecules into electrostatic potential maps using a haptic device | O. Delalande, N. Férey, B. Laurent, M. Guéroult, B. Hartman, M. Baaden | 2010
|  | Augmented Dynamics : Enhanced Visualization of Molecular Dynamics Trajectories | A. Tek, B. Laurent, M. Chavent, M. Baaden | 2010
|  | High quality visualisation: from small molecules to macromolecular systems | M. Chavent, A. Tek, A. Vanel, B. Levy, B. Raffin, M. Baaden | 2010
|  | A Multimodal VR Framework for Interactive Molecular Simulations | A. Tek, B. Laurent, M. Chavent, M. Baaden | 2010
|  | Enterobactin could play a role in preparing iron transport by remodeling the water network through FepA | J. Esque, M. Baaden, C. Oguey. | 2010
|  | A Rendering Method for Small Molecules up to Macromolecular Systems: HyperBalls Accelerated by Graphics Processors | M. Chavent, A. Vanel, B. Lévy, B. Raffin, A. Tek, M. Baaden | 2010
|  | Etude par simulation de dynamique moléculaire du complexe SNARE inséré entre deux membranes | A. Tek, B. Laurent, M. Baaden | 2010
|  | Electrostatically-driven fast association and perdeuteration allow detection of transferred cross-relaxation for G protein-coupled receptor ligands with equilibrium dissociation constants in the high-to-low nanomolar range | L. J. Catoire, M. Damian, M. Baaden, E. Guittet, J.-L. Banères | 2011
|  | Conformational dynamics in a nicotinic receptor homologue probed by simulations | H. Nury, F. Poitevin, C. Van Renterghem, B. Laurent, T. Allen, J.-P. Changeux, P.-J. Corringer, M. Delarue, M. Baaden | 2011
|  | FvNano - une plateforme de dynamique moléculaire interactive | M. Piuzzi, A. Tek, M. Chavent, A. Vanel, B. Raffin, A. Turki, S. Limet, S. Robert, N. Férey, M. Baaden | 2011
|  | UnityMol: game engine-powered GPU-boosted molecular visualization | M. Chavent, A. Tek, Z. Lv, M. Baaden | 2011
|  | GPU-accelerated molecular visualization using the Unity3D game engine | Z. Lv, M. Chavent, A. Tek, M. Baaden | 2011
|  | Insights into Membrane Fusion from Molecular Dynamics Simulations of SNARE Proteins | A. Tek, B. Laurent, M. Baaden | 2011
|  | bioSpring, an interactive and multi-resolution software for flexible docking and for mechanical exploration of large biomolecular assemblies - methods | N. Férey, O. Delalande, M. Baaden | 2011
|  | FvNano - an interactive molecular dynamics platform | M. Piuzzi, A. Tek, M. Baaden, M. Chavent, M. Dreher, B. Raffin, A. Turki, S. Limet, S. Robert, N. Férey | 2012
|  | Flowvr-Nano - visualiser, toucher, déformer et assembler des molécules du bout des doigts | M. Baaden & FvNano team | 2012
|  | Pushing the boundaries of computational biology with interdisciplinary approaches | M. Baaden | 2012
|  | HyperBalls on GPU: dynamic visualization of molecular structures - Scientific Visualization Accelerated by Graphics Processors | M. Chavent, A. Tek, Z. Lu, M. Piuzzi, B. Laurent, M. Baaden | 2012
|  | Insights into Membrane Fusion from Molecular Dynamics Simulations of SNARE Proteins | A. Tek, P.J. Bond, M.S.P. Sansom, M. Baaden | 2012
|  | Study of the interaction between general anesthetics and a bacterial homologue to the human nicotinic receptor | B. Laurent, S. Murail, P.-J. Corringer, M. Delarue, M. Baaden | 2012
|  | UnityMol: Visualization with a game engine | Z. Lv, A. Tek, M. Chavent, M. Baaden | 2012
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