A single snapshot of a coarse-grained molecular dynamics simulation of a protein (Synaptobrevin transmembrane domain) in a lipid bilayer. The protein is shown as licorice, lipids as lines and water as points. The red arrows show the user external forces applied interactively in the simulation. Here, the membrane anchoring of protein is probed by pulling on one particular side (on tryptophane residues).
Experiments with Guanylate Kinase.
Selection halo test.
Two test systems, Guanylate Kinase and the SNARE complex involved in membrane fusion.
A simple MDDriver test with a small peptide.
Simple VTK visualisation.
VTK-viewer on a small solvated system.
All-atom Guanylate Kinase experiments.
A VTK-based simple viewer for MDDriver experiments.
MDDriver VTK-viewer tests with Gromacs and with NAMD.
VTK-viewer with selection halo.
Another VTK-viewer example.
