BondParticleStyle.cs

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namespace Molecule.View.DisplayBond
{
    
    using UnityEngine;
    using System.Collections;
    using System.Collections.Generic;
    using Molecule.Model;
    using Molecule.Control;
    using UI;
    using Molecule.View.DisplayAtom;
    public class BondParticleStyle:IBondStyle
    {
        public List<int[]> bondList=new List<int[]>();
        public List<int[]> bondEPList=new List<int[]>();
        
        Particle[] p = new Particle[MoleculeModel.bondEPList.Count];
        int bondindex=0;

        public BondParticleStyle()
        {
        }

        
        public void DisplayBonds()
        {
                bondEPList=MoleculeModel.bondEPList;
                Debug.Log("DisplayBonds??bondEPList.Count "  + bondEPList.Count);
                int Number=bondEPList.Count;

                for(int i=0;i<Number;i++)
                {
                    if(i!=0)
                    {
                        CreateCylinderByParticle(i,(i+1));
                    }
                    else
                    {
                        CreateCylinderByParticle(i,bondEPList.Count);
                    }

                }
                GameObject ParticleStickManager=GameObject.Find("ParticleStickManager");
                        ParticleEffect particleeffect=ParticleStickManager.transform.GetComponent<ParticleEffect>();
                        particleeffect.atomcount=MoleculeModel.bondEPList.Count;
                        particleeffect.p=p;
                        particleeffect.SpawnEffect ();
                        Debug.Log("the length of p ="+p.Length);

                                
            
            
        }
        
        private void CreateCylinderByParticle(int start, int end) // Apparently unused function. Would make ParticleSticks.
        {
            
            
            GameObject ParticleManager=GameObject.Find("ParticleStickManager");
//          ParticleEffect particleeffect=ParticleManager.transform.GetComponent<ParticleEffect>();
            ParticleManager.transform.GetComponent<ParticleEffect>();
            for(int i=start;i<end;i++)
            {   
//              Vector3[]  location=bondEPList[i] as Vector3[];
                Vector3[] location = new Vector3[bondEPList.Count];
                for(int j=0; i<(bondEPList.Count); j++)
                {
                    Vector3 v = new Vector3(    (bondEPList[i][0]),
                                                (bondEPList[i][1]),
                                                (bondEPList[i][2])  );
                    location[i] = v;
                }
                
                Vector3 atom0position=new Vector3();
                Vector3 atom1position=new Vector3();
                Vector3 atomtype=new Vector3();     
                atom0position=location[0];
                atom1position=location[1];
                atomtype=location[2];
//              string atom0type="X";
//              string atom1type="X";
//              Color atom0color=Color.red;
//              Color atom1color=Color.red;
                float atomradius0=1f;
                float atomradius1=1f;
//              int oratom1number=0;
//              int oratom2number=0;
            
//              int atom1number;
//              int atom2number;
            
                if(UI.GUIDisplay.file_extension=="xgmml")
                {
//                  oratom1number=(int)atomtype.x;
//                  oratom2number=(int)atomtype.y;
                }
                else
                {
//                  oratom1number=(int)atomtype.z/100;
//                  oratom2number=(int)atomtype.z-oratom1number*99;
                }
                
                switch((int)atomtype.x)
                {
                                case 1:
//                                  atom0type="C";
//                                  atom0color= (MoleculeModel.carbonColor);
                                    atomradius0=1.7f;
                                    break;
                                case 2:
//                                  atom0type="N";
//                                  atom0color= (MoleculeModel.nitrogenColor);
                                    atomradius0=1.55f;
                                    
                                    break;
                                case 3:
//                                  atom0type="O";
//                                  atom0color= (MoleculeModel.oxygenColor);
                                    atomradius0=1.52f;
                                    
                                    break;
                                case 4:
//                                  atom0type="S";
//                                  atom0color= (MoleculeModel.sulphurColor);
                                    atomradius0=2.27f;
                                    
                                    break;
                                case 5:
//                                  atom0type="P";
//                                  atom0color= (MoleculeModel.phosphorusColor);
                                    atomradius0=1.18f;
                                    
                                    break;
                                case 6:
//                                  atom0type="H";
//                                  atom0color= (MoleculeModel.hydrogenColor);
                                    atomradius0=1.2f;
                                    
                                    break;
                                case 7:
//                                  atom0type="X";
//                                  atom0color= (MoleculeModel.unknownColor);
                                    atomradius0=1.0f;
                                    
                                    break;                      
                    }
            
                    switch((int)atomtype.y)
                    {
                                case 1:
//                                  atom1type="C";
//                                  atom1color= (MoleculeModel.carbonColor);
                                    atomradius1=1.7f;

                                    break;
                                case 2:
//                                  atom1type="N";
//                                  atom1color= (MoleculeModel.nitrogenColor);
                                    atomradius1=1.55f;
                                    
                                    break;
                                case 3:
//                                  atom1type="O";
//                                  atom1color= (MoleculeModel.oxygenColor);
                                    atomradius1=1.52f;
                                    
                                    break;
                                case 4:
//                                  atom1type="S";
//                                  atom1color= (MoleculeModel.sulphurColor);
                                    atomradius1=2.27f;
                                    
                                    break;
                                case 5:
//                                  atom1type="P";
//                                  atom1color= (MoleculeModel.phosphorusColor);
                                    atomradius1=1.18f;
                                    
                                    break;
                                case 6:
//                                  atom1type="H";
//                                  atom1color= (MoleculeModel.hydrogenColor);
                                    atomradius1=1.2f;
                                    
                                    break;
                                case 7:
//                                  atom1type="X";
//                                  atom1color= (MoleculeModel.unknownColor);
                                    atomradius1=1.0f;
                                    
                                    break;                      
                    }
            
                    Quaternion q=Quaternion.identity;
                    Vector3 v3=new Vector3();
                    v3.x=location[1].x*180f/3.1416f;
                    v3.y=location[1].y*180f/3.1416f;
                    v3.z=location[1].z*180f/3.1416f;
                    q.eulerAngles=v3;                   
                    p[bondindex+start].position=(atom0position+atom1position)/2;
                    p[bondindex+start].size=(float)(atomradius0+atomradius1)/2;
                    p[bondindex+start].color=Color.yellow;
                    p[bondindex+start].energy=1000;
                    
            }

        }
        
    }

}