UnityMol
1.0.25beta
Here is a list of all file members with links to the files they belong to:
- a -
ABS :
MarchingCubes.h
API :
RaySphereIntersection.h
,
OptimizedNBEnergy.h
,
MarchingCubes.h
,
NeighborSearch.hpp
appendAtomtoResidue() :
cpdb.cpp
,
cpdb.h
appendChaintoPdb() :
cpdb.cpp
,
cpdb.h
appendResiduetoChain() :
cpdb.cpp
,
cpdb.h
ArtemisClientPointer :
ArtemisManager.cs
,
ArtemisWrapper.cs
atom :
cpdb.h
atomPart :
OptimizedNBEnergy.cpp
- c -
cellStartEnd :
NeighborSearchLib.cpp
chain :
cpdb.h
chargeFF :
OptimizedNBEnergy.cpp
clamp() :
NeighborSearch.hpp
COMMIT_CPDB :
cpdb.h
computeCenterOfGravity() :
RaySphereIntersection.cpp
,
RaySphereIntersection.h
computeFieldLinesCPP() :
ComputeFieldLines.cpp
computeHighlightMesh() :
ComputeHighlightMesh.cpp
computeMaxDist() :
NeighborSearch.hpp
ComputeMesh() :
MarchingCubes.cpp
,
MarchingCubes.h
ComputeNBEnergies() :
OptimizedNBEnergy.cpp
,
OptimizedNBEnergy.h
computeRaycastSpheres() :
RaySphereIntersection.cpp
,
RaySphereIntersection.h
- d -
distanceAtom() :
cpdb.h
,
utils.cpp
- e -
elecScale :
OptimizedNBEnergy.cpp
EMPTYCELL :
NeighborSearchLib.cpp
EndSliderDragEventHandler() :
SliderDrag.cs
EPSILON :
NeighborSearchLib.cpp
extractStr() :
cpdb.cpp
- f -
fillHighlightMesh() :
RaySphereIntersection.cpp
,
RaySphereIntersection.h
findAtomsInRadius() :
NeighborSearch.hpp
,
NeighborSearchLib.cpp
findClosestAtom() :
NeighborSearch.hpp
,
NeighborSearchLib.cpp
flatten3DTo1D() :
NeighborSearch.hpp
freeMem() :
NeighborSearch.hpp
,
NeighborSearchLib.cpp
freeMeshData() :
MarchingCubes.cpp
,
MarchingCubes.h
freePDB() :
cpdb.cpp
,
cpdb.h
- g -
g2s() :
ComputeFieldLines.cpp
getAlternativeLoc() :
cpdb.cpp
getAtom() :
cpdb.h
,
utils.cpp
getAtomElement() :
cpdb.cpp
getAtomId() :
cpdb.cpp
getAtomType() :
cpdb.cpp
getChainId() :
cpdb.cpp
getCoordinates() :
cpdb.cpp
getMinMax() :
NeighborSearch.hpp
getNeighboorsVertices() :
SmoothMesh.cpp
,
SmoothMesh.h
getOccupancy() :
cpdb.cpp
getResidueId() :
cpdb.cpp
getResType() :
cpdb.cpp
getTempFactor() :
cpdb.cpp
getTriangles() :
MarchingCubes.cpp
,
MarchingCubes.h
getVertices() :
MarchingCubes.cpp
,
MarchingCubes.h
gridNeighborDim :
NeighborSearchLib.cpp
gridResolutionNeighbor :
NeighborSearchLib.cpp
gridToSpace() :
NeighborSearch.hpp
- i -
INC_CAPACITY :
cpdb.cpp
initGridNeighbor() :
NeighborSearch.hpp
,
NeighborSearchLib.cpp
initPDB() :
cpdb.cpp
,
cpdb.h
isInBox() :
ComputeFieldLines.cpp
- m -
magnitude() :
ComputeFieldLines.cpp
Magnitude() :
OptimizedNBEnergy.cpp
main() :
MarchingCubes.cpp
marchingCubes() :
MarchingCubes.cpp
,
MarchingCubes.h
MAX :
RaySphereIntersection.cpp
,
ComputeFieldLines.cpp
MAXGRIDSIZE :
MarchingCubes.cpp
mesh :
MarchingCubes.cpp
MIN :
RaySphereIntersection.cpp
,
ComputeFieldLines.cpp
- n -
Natoms :
NeighborSearchLib.cpp
nbCh :
OptimizedNBEnergy.cpp
numTypes :
OptimizedNBEnergy.cpp
- o -
originGridNeighbor :
NeighborSearchLib.cpp
- p -
params :
OptimizedNBEnergy.cpp
parsePDB() :
cpdb.cpp
,
cpdb.h
pdb :
cpdb.h
PolygoniseCube() :
MarchingCubes.cpp
,
MarchingCubes.h
printPDB() :
cpdb.cpp
,
cpdb.h
- r -
readDX() :
MarchingCubes.cpp
residue :
cpdb.h
result :
OptimizedNBEnergy.cpp
- s -
s2g() :
ComputeFieldLines.cpp
serialIntersectSpheres() :
RaySphereIntersection.cpp
setupEnergyComputation() :
OptimizedNBEnergy.cpp
,
OptimizedNBEnergy.h
sizeMesh :
MarchingCubes.cpp
sizePart :
OptimizedNBEnergy.cpp
smoothMeshLaplacian() :
SmoothMesh.cpp
,
SmoothMesh.h
SortedAtomPos :
NeighborSearchLib.cpp
spaceToGrid() :
NeighborSearch.hpp
split() :
MarchingCubes.cpp
sqr_distance() :
NeighborSearch.hpp
sqthresh :
OptimizedNBEnergy.cpp
- t -
triangles :
MarchingCubes.cpp
- u -
unflatten1DTo3D() :
NeighborSearch.hpp
uniqueTypeId :
OptimizedNBEnergy.cpp
updateAtomPointers() :
cpdb.cpp
updateResiduePointers() :
cpdb.cpp
- v -
VertexInterp() :
MarchingCubes.cpp
,
MarchingCubes.h
vertices :
MarchingCubes.cpp
- w -
writeFilePDB() :
cpdb.cpp
,
cpdb.h
writePDB() :
cpdb.cpp
,
cpdb.h
- x -
XDRStatus :
XDRFileWrapper.cs
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