Computational study of the outer membrane enzyme OmpT

We recently published computational work on OmpT where we describe molecular dynamics simulations and docking of several tetra-peptides. [[Baaden 2004]] We refined one of the OmpT-ARRA complexes to examine the interactions of the enzyme with its substrate. Bearing in mind the simple docking procedure used and the approximate nature of the resulting complex, we provide a VRML model of the complex as supplementary information. It can be accessed via the link on the image below.