GenericAtomManager.cs

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using UnityEngine;
using System.Collections;

public struct SingleAtomSelection {
    // The identifier of the atom, as found in the PDB file.
    public int pdbIndex;
    // The scene object of the selected atom.
    // Relies on GenericAtomManager implementations representations.
    public GameObject go;
}

public interface GenericAtomManager {
    //
    // IMD simulation "API".
    //

    // Returns the closest atom game object in space from a given position during an IMD simulation.
    SingleAtomSelection getClosestAtomGameObject(Vector3 position);
    // Instantiate atom selection mono behavior script for every atom.
    void CreateMouseOversIMDSimulation();
    // Deinstantiate atom selection mono behavior script for every atom.
    void DestroyMouseOversIMDSimulation();

}