UMol.ProteinSelection Class Reference

Inheritance diagram for UMol.ProteinSelection:

Public Member Functions
	ProteinSelection (MDAnalysisSelection mda, string t, int p)
	ProteinSelection (ProteinSelection cpy)
override void	init (List< string > tokens, ref int curId)
override HashSet< UnityMolAtom >	apply (HashSet< UnityMolAtom > group)
override MetaClass	Clone ()
Public Member Functions inherited from UMol.MDASelection
	MDASelection (MDAnalysisSelection mda, string t, int p)
	MDASelection (MDASelection cpy)
Public Member Functions inherited from UMol.MetaClass
	MetaClass ()
	MetaClass (MetaClass cpy)

Static Public Attributes
static HashSet< string >	knownResidues

Additional Inherited Members
Public Attributes inherited from UMol.MetaClass
MDAnalysisSelection	mdaSel
string	token
int	precedence

Constructor & Destructor Documentation

ProteinSelection() [1/2]

UMol.ProteinSelection.ProteinSelection	(	MDAnalysisSelection	mda,
		string	t,
		int	p
	)

ProteinSelection() [2/2]

UMol.ProteinSelection.ProteinSelection

(

ProteinSelection

cpy

)

Member Function Documentation

apply()

override HashSet<UnityMolAtom> UMol.ProteinSelection.apply ( HashSet< UnityMolAtom >  group )

virtual

Implements UMol.MetaClass.

Clone()

override MetaClass UMol.ProteinSelection.Clone ( )

virtual

Implements UMol.MetaClass.

init()

override void UMol.ProteinSelection.init ( List< string >  tokens, ref int  curId  )

virtual

Implements UMol.MDASelection.

Member Data Documentation

knownResidues

HashSet<string> UMol.ProteinSelection.knownResidues

static

Initial value:

= new HashSet<string> {
        
        "ALA", "ARG", "ASN", "ASP", "CYS", "GLN", "GLU", "GLY", "HSD",
        "HSE", "HSP", "ILE", "LEU", "LYS", "MET", "PHE", "PRO", "SER", "THR",
        "TRP", "TYR", "VAL", "ALAD",
        
        
        "HIS", "MSE",
        
        "ARGN", "ASPH", "CYS2", "CYSH", "QLN", "PGLU", "GLUH", "HIS1", "HISD",
        "HISE", "HISH", "LYSH",
        
        "ASN1", "CYS1", "HISA", "HISB", "HIS2",
        
        "HID", "HIE", "HIP", "ORN", "DAB", "LYN", "HYP", "CYM", "CYX", "ASH",
        "GLH", "ACE", "NME",
        
        "NALA", "NGLY", "NSER", "NTHR", "NLEU", "NILE", "NVAL", "NASN", "NGLN",
        "NARG", "NHID", "NHIE", "NHIP", "NTRP", "NPHE", "NTYR", "NGLU", "NASP",
        "NLYS", "NPRO", "NCYS", "NCYX", "NMET", "CALA", "CGLY", "CSER", "CTHR",
        "CLEU", "CILE", "CVAL", "CASF", "CASN", "CGLN", "CARG", "CHID", "CHIE",
        "CHIP", "CTRP", "CPHE", "CTYR", "CGLU", "CASP", "CLYS", "CPRO", "CCYS",
        "CCYX", "CMET", "CME", "ASF"
    }

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The documentation for this class was generated from the following file:

• C:/Users/Xavier/Dev/UnityMolX/Assets/Scripts/SelectionMDAnalysis/MDAnalysisSelection.cs