AtomTree Class Reference

Collaboration diagram for AtomTree:

Public Member Functions
	AtomTree (Vector3 b0, Vector3 b1)
string	GetClosestAtomType (Vector3 pos)
Color	GetClosestAtomColor (Vector3 pos)
void	SubGetClosestAtomColor (Vector3 pos)
void	Print ()

Static Public Member Functions
static AtomTree	Build ()

Private Member Functions
int	GetChildIndex (Vector3 p)
Vector3	GetOffset (Vector3 b0, Vector3 b1, int i)
void	AddAtomToLeaf (Vector3 pos, string type, Color col)
void	Subdivide ()
void	AddAtom (Vector3 pos, string type, Color col)
bool	IsEmpty ()
AtomTree	GetOptimalChild (Vector3 pos)

Private Attributes
List< string >	types
List< Vector3 >	positions
List< Color >	colors
Vector3	bound0
Vector3	bound1
Vector3	split
AtomTree[]	children
bool	isLeaf = true

Static Private Attributes
static int	MAX_ATOMS = 8
static Color	candidateCol
static float	candidateDist

Detailed Description

Definition at line 6 of file AtomTree.cs.

Constructor & Destructor Documentation

AtomTree.AtomTree	(	Vector3	b0,
		Vector3	b1
	)

Definition at line 18 of file AtomTree.cs.

Referenced by Build(), and Subdivide().

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Member Function Documentation

void AtomTree.AddAtom ( Vector3  pos, string  type, Color  col  )

private

Definition at line 112 of file AtomTree.cs.

References AddAtom(), GetChildIndex(), and Subdivide().

Referenced by AddAtom(), and Build().

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void AtomTree.AddAtomToLeaf ( Vector3  pos, string  type, Color  col  )

private

Definition at line 76 of file AtomTree.cs.

References Subdivide().

Referenced by Subdivide().

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static AtomTree AtomTree.Build ( )

static

Definition at line 231 of file AtomTree.cs.

References AddAtom(), Molecule.Model.MoleculeModel.atomsChainList, Molecule.Model.MoleculeModel.atomsColorList, Molecule.Model.MoleculeModel.atomsLocationlist, Molecule.Model.MoleculeModel.atomsNumberList, Molecule.Model.MoleculeModel.atomsResnamelist, Molecule.Model.MoleculeModel.atomsTypelist, AtomTree(), Molecule.Model.MoleculeModel.BFactorList, UI.UIData.isGLIC, Molecule.Model.MoleculeModel.MaxValue, Molecule.Model.MoleculeModel.MinValue, UI.UIData.spread_tree, UI.UIData.surfColBF, UI.UIData.surfColChain, UI.UIData.surfColHydroEis, UI.UIData.surfColHydroEng, UI.UIData.surfColHydroKD, UI.UIData.surfColHydroWO, and UI.UIData.surfColPChim.

Referenced by SurfaceManager.InitTree(), and GuidedNavigationManager.NearSpreading().

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int AtomTree.GetChildIndex ( Vector3  p )

private

Definition at line 28 of file AtomTree.cs.

Referenced by AddAtom(), GetClosestAtomType(), Subdivide(), and SubGetClosestAtomColor().

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Color AtomTree.GetClosestAtomColor

(

Vector3

pos

)

Definition at line 177 of file AtomTree.cs.

References candidateCol, and SubGetClosestAtomColor().

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string AtomTree.GetClosestAtomType

(

Vector3

pos

)

Definition at line 151 of file AtomTree.cs.

References GetChildIndex(), GetClosestAtomType(), and GetOptimalChild().

Referenced by SurfaceManager.ColorVertices(), GetClosestAtomType(), and GuidedNavigationManager.NearSpreading().

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Vector3 AtomTree.GetOffset ( Vector3  b0, Vector3  b1, int  i  )

private

Definition at line 41 of file AtomTree.cs.

Referenced by Subdivide().

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AtomTree AtomTree.GetOptimalChild ( Vector3  pos )

private

Definition at line 134 of file AtomTree.cs.

References IsEmpty(), and split.

Referenced by GetClosestAtomType().

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bool AtomTree.IsEmpty ( )

private

Definition at line 130 of file AtomTree.cs.

Referenced by GetOptimalChild().

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void AtomTree.Print

(

)

Definition at line 216 of file AtomTree.cs.

References Print().

Referenced by Print().

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void AtomTree.Subdivide ( )

private

Definition at line 86 of file AtomTree.cs.

References AddAtomToLeaf(), AtomTree(), bound0, GetChildIndex(), GetOffset(), and MAX_ATOMS.

Referenced by AddAtom(), and AddAtomToLeaf().

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void AtomTree.SubGetClosestAtomColor

(

Vector3

pos

)

Definition at line 186 of file AtomTree.cs.

References GetChildIndex(), isLeaf, and SubGetClosestAtomColor().

Referenced by GetClosestAtomColor(), and SubGetClosestAtomColor().

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Member Data Documentation

Vector3 AtomTree.bound0

private

Definition at line 10 of file AtomTree.cs.

Referenced by Subdivide().

Vector3 AtomTree.bound1

private

Definition at line 10 of file AtomTree.cs.

Color AtomTree.candidateCol

staticprivate

Definition at line 15 of file AtomTree.cs.

Referenced by GetClosestAtomColor().

float AtomTree.candidateDist

staticprivate

Definition at line 16 of file AtomTree.cs.

AtomTree [] AtomTree.children

private

Definition at line 11 of file AtomTree.cs.

List<Color> AtomTree.colors

private

Definition at line 9 of file AtomTree.cs.

bool AtomTree.isLeaf = true

private

Definition at line 12 of file AtomTree.cs.

Referenced by SubGetClosestAtomColor().

int AtomTree.MAX_ATOMS = 8

staticprivate

Definition at line 13 of file AtomTree.cs.

Referenced by Subdivide().

List<Vector3> AtomTree.positions

private

Definition at line 8 of file AtomTree.cs.

Vector3 AtomTree.split

private

Definition at line 10 of file AtomTree.cs.

Referenced by GetOptimalChild().

List<string> AtomTree.types

private

Definition at line 7 of file AtomTree.cs.

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The documentation for this class was generated from the following file:

• Assets/Scripts/Surface-Electrostatic/AtomTree.cs