Public Member Functions
	RingBlending ()

List< GameObject >	CreateRingBlending ()

List< GameObject >	createAllMesh ()

GameObject	createPCObj (Mesh mesh, string res)

GameObject	CreateOxygenSphere (int pos)

List< GameObject >	ShowOxySphere ()

Static Public Member Functions
static Mesh[]	createAMeshPC (List< float[]> cxLocation)

Public Attributes
ArrayList	listOfPolygon = new ArrayList()

int	nbrMono

bool	showRingBlending

List< float[]>	coordinates = new List<float[]>()

float[]	points = new float[3]

List< Mesh >	meshList = new List<Mesh>()

List< GraphVertex >	molAsGraph = new List<GraphVertex>()

List< List< int > >	cycles = new List<List<int>>()

List< string >	residueslist = new List<string>()

List< float[]>	atomsLocationlist = new List<float[]>()

Static Public Attributes
static int	index = 0

Detailed Description

this class is made to fill cycle inside a molecule with a semi-transparent polygon to have a effect of filling and locate more easylli aromatic residues or sugar.

Definition at line 15 of file RingBlending.cs.

Constructor & Destructor Documentation

RingBlending.RingBlending ( )

Definition at line 36 of file RingBlending.cs.

References Molecule.Model.MoleculeModel.atomsLocationlist, Molecule.Model.MoleculeModel.atomsNamelist, Molecule.Model.MoleculeModel.atomsResnamelist, Molecule.Model.MoleculeModel.bondEPList, GraphVertex.coordinate, GraphVertex.id, GraphVertex.resname, and GraphVertex.type.

Member Function Documentation

List<GameObject> RingBlending.createAllMesh ( )

this fonction will call the other functions to create all mesh and also create gameobject.

Definition at line 110 of file RingBlending.cs.

References createAMeshPC(), and createPCObj().

Referenced by CreateRingBlending().

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static Mesh [] RingBlending.createAMeshPC ( List< float[]> cxLocation )

static

This function will create two mesh.

Each mesh represent a pololygon which fill a residu cycle (ex: sugar or aromatic residues). it returns a list of 2 mesh because with the shader transparent/diffuse don't show two face of a mesh. So there is a mesh for one side and another mesh for the other side.

Returns: The A mesh P.

Parameters

cxLocation list for atoms location..

Definition at line 145 of file RingBlending.cs.

Referenced by createAllMesh().

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GameObject RingBlending.CreateOxygenSphere ( int pos )

Definition at line 235 of file RingBlending.cs.

Referenced by ShowOxySphere().

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GameObject RingBlending.createPCObj	(	Mesh	mesh,
		string	res
	)

Create an object "RingBlending" (polygon which fill a cycle).

Also add a color (official residue color) and the shader.

Parameters

mesh	the mesh (the polygon).
res	the residue name, to get the color.

Definition at line 219 of file RingBlending.cs.

References UI.GUIDisplay.colorByResiduesDict.

Referenced by createAllMesh().

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List<GameObject> RingBlending.CreateRingBlending ( )

This function will convert the molecule to a "graph" (an object "GraphVertex" is made from each atoms and countains a list of all atoms neighbor).

It's use to search and locate cycle inside a molecule. Once that we add the each neighbor, we searh cycle. Once we now where is the cycle, we draw polygon to fill them at the right position.

Definition at line 99 of file RingBlending.cs.

References createAllMesh().

Referenced by SugarManager.CreateRingBlending().

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