Molecule.Model.AtomModel Class Reference

Static Public Member Functions
static void	ChangeChainColor (string chain, Color c)
static Color	GetChainColor (string chain)
static void	ChangeAtomColor (string atomType, Color c)
static Color	GetAtomColor (string atomType)
static bool	IsAlive ()
static void	InitAtomic ()
static void	InitHiRERNA ()
static AtomModel	GetModel (string type)

Protected Attributes
string	_type
float	_radius
float	_scale
Color	_baseColor
string	_baseTexture

Properties
string	type [get]
float	radius [get, set]
float	scale [get, set]
Color	baseColor [get, set]
string	baseTexture [get, set]

Private Member Functions
	AtomModel (string type, float radius, float scale, Color col, string texture)

Static Private Attributes
static OrderedDictionary	s_typeToModel = null

Detailed Description

Definition at line 72 of file AtomModel.cs.

Constructor & Destructor Documentation

Molecule.Model.AtomModel.AtomModel ( string  type, float  radius, float  scale, Color  col, string  texture  )

private

Definition at line 103 of file AtomModel.cs.

Member Function Documentation

static void Molecule.Model.AtomModel.ChangeAtomColor ( string  atomType, Color  c  )

static

Changes the color of the atom type.

Parameters

atomType	Atom type.
c	New color of the atom type.

Definition at line 150 of file AtomModel.cs.

static void Molecule.Model.AtomModel.ChangeChainColor ( string  chain, Color  c  )

static

Changes the color of the chain.

Parameters

chain	Chain to be changed, string.
c	Color to be applied, type Color.

Definition at line 123 of file AtomModel.cs.

static Color Molecule.Model.AtomModel.GetAtomColor ( string  atomType )

static

Gets the color of the atom type.

Returns

The atom color.

Parameters

atomType

Atom type.

Definition at line 163 of file AtomModel.cs.

Referenced by BallUpdate.UpdateColorsFromModel().

Here is the caller graph for this function:

static Color Molecule.Model.AtomModel.GetChainColor ( string  chain )

static

Gets the color of the chain.

Returns

The chain color.

Parameters

chain

Chain.

Definition at line 137 of file AtomModel.cs.

static AtomModel Molecule.Model.AtomModel.GetModel ( string  type )

static

Definition at line 257 of file AtomModel.cs.

Referenced by SurfaceManager.ColorVertices(), BFactorRep.CreateBFRep(), Molecule.Control.ControlMolecule.CreateSplines(), ParseData.ParsePDB.SocketPDB.loadPDB(), ParseData.ParsePDB.RequestPDB.ReadAnimTop(), ParsePDB.ReadPDB2(), ParseData.ParsePDB.RequestPDB.ReadXGMML(), and AlphaChainSmoother.ReSpline().

Here is the caller graph for this function:

static void Molecule.Model.AtomModel.InitAtomic ( )

static

Inits the atomic and chains scales.

Definition at line 180 of file AtomModel.cs.

Referenced by ParsePDB.FetchPDB2(), ParsePDB.LoadPDBRequest2(), LoadGUI.OpenFileCallback(), UI.GUIDisplay.OpenFileCallback(), and Molecule3D.Start().

Here is the caller graph for this function:

static void Molecule.Model.AtomModel.InitHiRERNA ( )

static

Definition at line 227 of file AtomModel.cs.

References Molecule.Model.MoleculeModel.carbonColor, ColorObject.color, Molecule.Model.MoleculeModel.oxygenColor, and Molecule.Model.MoleculeModel.phosphorusColor.

Referenced by ParsePDB.FetchPDB2(), ParsePDB.LoadPDBRequest2(), LoadGUI.OpenFileCallback(), and UI.GUIDisplay.OpenFileCallback().

Here is the caller graph for this function:

static bool Molecule.Model.AtomModel.IsAlive ( )

static

Determines whether this instance is alive.

Returns

true if this instance is alive; otherwise, false.

Definition at line 173 of file AtomModel.cs.

Member Data Documentation

Color Molecule.Model.AtomModel._baseColor

protected

Definition at line 76 of file AtomModel.cs.

string Molecule.Model.AtomModel._baseTexture

protected

Definition at line 77 of file AtomModel.cs.

float Molecule.Model.AtomModel._radius

protected

Definition at line 74 of file AtomModel.cs.

float Molecule.Model.AtomModel._scale

protected

Definition at line 75 of file AtomModel.cs.

string Molecule.Model.AtomModel._type

protected

Definition at line 73 of file AtomModel.cs.

OrderedDictionary Molecule.Model.AtomModel.s_typeToModel = null

staticprivate

Definition at line 111 of file AtomModel.cs.

Property Documentation

Color Molecule.Model.AtomModel.baseColor

getset

Definition at line 93 of file AtomModel.cs.

Referenced by SurfaceManager.ColorVertices(), Molecule.View.DisplayAtom.AtomCubeStyle.CreateAtomHB(), Molecule.View.DisplayAtom.AtomSphereStyle.DisplayAtomMethodBySphere(), ParseData.ParsePDB.RequestPDB.ReadAnimTop(), and ParsePDB.ReadPDB2().

string Molecule.Model.AtomModel.baseTexture

getset

Definition at line 98 of file AtomModel.cs.

float Molecule.Model.AtomModel.radius

getset

Definition at line 83 of file AtomModel.cs.

Referenced by Molecule.View.DisplayAtom.AtomCubeStyle.CreateAtomHB(), and Molecule.View.DisplayAtom.AtomSphereStyle.DisplayAtomMethodBySphere().

float Molecule.Model.AtomModel.scale

getset

Definition at line 88 of file AtomModel.cs.

Referenced by Molecule.View.DisplayAtom.AtomCubeStyle.CreateAtomHB(), and Molecule.View.DisplayAtom.AtomSphereStyle.DisplayAtomMethodBySphere().

string Molecule.Model.AtomModel.type

get

Definition at line 79 of file AtomModel.cs.

Referenced by Molecule.View.DisplayAtom.AtomCubeStyle.CreateAtomHB(), Molecule.View.DisplayAtom.AtomSphereStyle.DisplayAtomMethodBySphere(), and HBallMeshManager.SetColor().

---

The documentation for this class was generated from the following file:

• Assets/Scripts/Molecule/Model/AtomModel.cs