Creates a Molecule object from a local or remote PDBx/mmCIF file file More...

Inheritance diagram for UMol.PDBxReader:

Public Member Functions
	PDBxReader (string fileName="", string PDBxServer="")

IEnumerator	Fetch (string entryCode, System.Action< UnityMolStructure > result, bool readHet=true, bool readWater=true)
	Fetches compressed PDBx/mmCIF file from RCSB servers and parses the data More...

UnityMolStructure	Fetch (string entryCode, bool readHet=true, bool readWater=true)

Public Member Functions inherited from UMol.Reader
	Reader ()

	Reader (string fileName)

void	updateFileNames ()

UnityMolStructure	Read (bool readHet=true, bool readWater=true)
	Reads a file from local HDD and parses the data More...

Static Public Attributes
static string []	PDBxextensions = {"cif", "cif.gz", "mmcif", "mmcif.gz"}

Static Public Attributes inherited from UMol.Reader
static int	limitBigMolecule = 5000

Protected Member Functions
override UnityMolStructure	ReadData (StreamReader sr, bool readHET, bool readWater, bool simplyParse=false)
	Parses a PDBx/mmCIF file file to a Molecule object More...

Additional Inherited Members
Static Public Member Functions inherited from UMol.Reader
static void	identifyStructureMolecularType (UnityMolStructure s)
	Fills the structureType field in the UnityMolStructure class based on atom names More...

static Reader	GuessReaderFrom (string filename, string format="")

Static Protected Member Functions inherited from UMol.Reader
static void	FillSecondaryStructure (UnityMolStructure structure, List< secStruct > secStructsList)

static void	CreateColliders (UnityMolSelection sel)
	Creates sphere collider for each atom of the current model of the structure More...

static bool	QuickStartWith (string full, string comp)
	Check if the string full contains at the begining, the string comp More...

static string	findNewAtomName (HashSet< string > residueAtoms, string name)

Protected Attributes inherited from UMol.Reader
string	fileName

string	fileNameWithoutExtension

Detailed Description

Creates a Molecule object from a local or remote PDBx/mmCIF file file

Constructor & Destructor Documentation

IEnumerator UMol.PDBxReader.Fetch	(	string	entryCode,
		System.Action< UnityMolStructure >	result,
		bool	readHet = `true`,
		bool	readWater = `true`
	)

Fetches compressed PDBx/mmCIF file from RCSB servers and parses the data

UnityMolStructure UMol.PDBxReader.Fetch	(	string	entryCode,
		bool	readHet = `true`,
		bool	readWater = `true`
	)

override UnityMolStructure UMol.PDBxReader.ReadData	(	StreamReader	sr,
		bool	readHET,
		bool	readWater,
		bool	simplyParse = `false`
	)

protectedvirtual

Parses a PDBx/mmCIF file file to a Molecule object

Implements UMol.Reader.

string [] UMol.PDBxReader.PDBxextensions = {"cif", "cif.gz", "mmcif", "mmcif.gz"}

static

The documentation for this class was generated from the following file: